1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggacaaactttgcctggctcactcttataaatctccaattgcacaattgagttctacctgggctggaagcttctactaatttctgcgctgaatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAG
species | Oryza sativa |
transcript | LOC_Os01g60660.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGAACCTCAGCCTCGATCCG AATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCEST: gi|29683642|gb|CB679917.1|CB679917
genomic: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGgtgattcccc ... aatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
EST: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCG AATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCEST: gi|29642107|gb|CB647114.1|CB647114
genomic: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGgtgattcccc ... aatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
EST: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCG AATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCEST: gi|25800390|gb|CA756351.1|CA756351
genomic: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGgtgattcccc ... aatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
EST: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCG AATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCEST: gi|29642063|gb|CB647070.1|CB647070
genomic: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGgtgattcccc ... aatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
EST: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCG AATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCEST: gi|29672821|gb|CB669096.1|CB669096
genomic: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGgtgattcccc ... aatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
EST: GCAAGCGGGCCATGGCCTACGCGCTCTGCCAGCACCTCAGCCTCGATCCG AATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
genomic: GCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGgtgattcccc ... aatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTC
attgagttctacctgggctggaagcttctactaatttctgcgctgaatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAG
tactaat putative branch site (score: 74)
tactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacaaactttgcctggctcactcttataaatctccaattgcacaattgagttctacctgggctggaagcttctactaatttctgcgctgaatattacagAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG