1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgaaccttaacttgaaacagttgaaacacacgacatgagcatcggtcagtatctggtgtctgttttaggctgttattacagggatgtgtgtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACACCGACACAACTTTGACGTACGTTTCTGACAGAGAATTTGTCGAGAGCGG
species | Oryza sativa |
transcript | LOC_Os01g59570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTG GGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACAEST: gi|88741092|gb|CI764600.1|CI764600
genomic: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTGgtaattatca ... gtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACA
EST: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTG GGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACAEST: gi|88745582|gb|CI768942.1|CI768942
genomic: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTGgtaattatca ... gtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACA
EST: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTG GGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACAEST: gi|88761711|gb|CI771267.1|CI771267
genomic: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTGgtaattatca ... gtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACA
EST: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTG GGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACA
genomic: GCTGCTCATCCTGGTCGCGGCGACACAAGTCCATGGCGTGTCTCCTCCTGgtaattatca ... gtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACA
gtcagtatctggtgtctgttttaggctgttattacagggatgtgtgtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACACCGACACAACTTTGACGTACGTTTCTGACAGAGAATTTGTCGAGAGCGG
tgttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaaccttaacttgaaacagttgaaacacacgacatgagcatcggtcagtatctggtgtctgttttaggctgttattacagggatgtgtgtctgtgcagGGTTTTTAAACGTCGACTGCGGATTGACAAATCGTAGTACTTACAATGACACCGACACAACTTTGACGTACGTTTCTGACAGAGAATTTGTCGAGAGCGG
- - - - - - - gaaacag
- - - - - - - - - - - - -aacacac
- - - - - - - - - - - - - - - - - catgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - tctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgtg