1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataatttcatgcacaaattaacggagcaatattgcagtaactgatgttgcattgtaactgacgatggtgttggtgtttgatcaatggaaatggcagGAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGG
species | Oryza sativa |
transcript | LOC_Os01g58910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAG GAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTEST: gi|88736286|gb|CI759794.1|CI759794
genomic: CACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGgtaataattt ... gaaatggcagGAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCT
EST: CACGCCTTCGCCACCATNTCCATCGCACCCTTCGCCCTCCTCCTCGAGAG GAAGGTGAGGCCCAAGATGACGTGGTCGGTGT
genomic: CACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGgtaataattt ... gaaatggcagGAAGGTGAGGCCCAAGATGACGTGGTCGGTGT
tgatgttgcattgtaactgacgatggtgttggtgtttgatcaatggaaatggcagGAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGG
attgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttcatgcacaaattaacggagcaatattgcagtaactgatgttgcattgtaactgacgatggtgttggtgtttgatcaatggaaatggcagGAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG