1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgcagctaccctttgtatgactaatgaaagatggaattcctattgtttccttaagtactgttgttgcaatcgttgctgaagtattcctgaatcaggcagACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTA
species | Oryza sativa |
transcript | LOC_Os01g58690.2 |
intron # | 1 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTG
genomic: GTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTgtatccccct ... aatcaggcagACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTG
gtttccttaagtactgttgttgcaatcgttgctgaagtattcctgaatcaggcagACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTA
ttcctgaat putative branch site
ttaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcagctaccctttgtatgactaatgaaagatggaattcctattgtttccttaagtactgttgttgcaatcgttgctgaagtattcctgaatcaggcagACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
gtgcagc
- - - - - - -ttgtatg
- - - - - - - - - - - -aatgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcctg