1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagtgtgcagctaccctttgtatgactaatgaaagatggaattcctattgtttccttaagtactgttgttgcaatcgttgctgaagtattcctgaatcagGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGG
species | Oryza sativa |
transcript | LOC_Os01g58690.1 |
intron # | 1 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT ----ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGEST: gi|7378348|gb|AU088619.1|AU088619
genomic: GTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTgtatccccct ... cctgaatcagGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGG
EST: GTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT GCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGG
genomic: GTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTgtatccccct ... cctgaatcagGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGG
tattgtttccttaagtactgttgttgcaatcgttgctgaagtattcctgaatcagGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGG
ttcctgaat putative branch site
tattcct CT-rich tract
ttaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgtgcagctaccctttgtatgactaatgaaagatggaattcctattgtttccttaagtactgttgttgcaatcgttgctgaagtattcctgaatcagGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA