1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatgggccgtccccagaacattgcactttaaagaaggggggggggggggggggatatcattacttaatgtgttaataactgtgaaccgtgtgcatggcagGTGTCAGGTGGTTAAGGAATCTGAAGTAGGGTTGATATGGAGTCCACTGATGAGCATGCAATGGAGAGTGACACTGATTTGATCAGTGTGCTGCCTGGAG
species | Oryza sativa |
transcript | LOC_Os01g57920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCCCCAGCGATTCCAAGGGAGCAGTCCCCTGTTCCCTCCATTGCCG GTGCCAAGTGGTTAAGGAATCTGAAGTAGGGTTGATATGGAGTCCACTGAT
genomic: GCTTCCCCCGGCGATTCCAAGGGAGCAGTCCCCTGTTCCCTCCATTGCTGgtgagatcgc ... tgcatggcagGTGTCAGGTGGTTAAGGAATCTGAAGTAGGGTTGATATGGAGTCCACTGAT
ggggggggatatcattacttaatgtgttaataactgtgaaccgtgtgcatggcagGTGTCAGGTGGTTAAGGAATCTGAAGTAGGGTTGATATGGAGTCCACTGATGAGCATGCAATGGAGAGTGACACTGATTTGATCAGTGTGCTGCCTGGAG
taataac putative branch site (score: 1)
atatcattacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgggccgtccccagaacattgcactttaaagaaggggggggggggggggggatatcattacttaatgtgttaataactgtgaaccgtgtgcatggcagGTGTCAGGTGGTTAAGGAATCTGAAGTAGGGTTGATATGGAGTCCACTGATGAGCATGCAATGGAGAGTGACACTGATTTGATCAGTGTGCTGCCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- tgggccg
- - - - - - - - - cattgca
- - - - - - - - - - - - - - -aaagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaccg