1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcaaatcaacagtgtttatttctctcatattaatttgctaatgcataaagcaaaatagtatgcttcaatctggtgaaatatggtttttttgtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCA
species | Oryza sativa |
transcript | LOC_Os01g57360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|29687190|gb|CB683465.1|CB683465
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|88300215|gb|CI582449.1|CI582449
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|58657462|gb|CK046142.1|CK046142
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCGEST: gi|58604290|gb|CK014818.1|CK014818
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: TGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCCEST: gi|58687533|gb|CK076220.1|CK076220
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|88339684|gb|CI660438.1|CI660438
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|88354261|gb|CI637827.1|CI637827
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|88425603|gb|CI569327.1|CI569327
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTEST: gi|29685465|gb|CB681740.1|CB681740
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
EST: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATG TTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
genomic: GGAGGGGCGGCGATCTCCATCTGGCGAGCAGAGCAGGCGAGAGGATTATGgtgagcatcc ... gtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCT
taaagcaaaatagtatgcttcaatctggtgaaatatggtttttttgtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCA
tttttttgtttttgc CT-rich tract
aaatatggtttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaatcaacagtgtttatttctctcatattaatttgctaatgcataaagcaaaatagtatgcttcaatctggtgaaatatggtttttttgtttttgcagTTCTCGTTTCTCCTACCCTACAGGATGTTTAGATAATTCGAGACCCTAGCTTTGAACTTTGAGTAGGTTCAGTTCTTAGCTGTAGAAGATGAATGGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- aaatcaa
- - - - - - - - - - - - - - - - -tttgcta
- - - - - - - - - - - - - - - - - - - - atgcata
- - - - - - - - - - - - - - - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtga