Sequence
atgc intronic sequence ATGC exonic sequencegtgcgttcccttttctcggttcggtttggttggtgggggaagggggtaattctaattctgggcttgctctgcagCATCCGGATCCGATAGGGGAGGGGTTGGCCATGGAGGCTATGGTGGAGGCGGCCGGGCCGGAGTGCATCGTGCCCGGGCAGCAGGCGCCGCTGCGGCTGC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g56890.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g56890.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G132978_T01 (Zea mays), 3'ss of exon 1
--------gtgcgttcccttttctcggttcggttt-ggttgg--tgggggaagggggtaattctaattctgggct---tgctctgcagCATCCGGATCCGATAGGGGAGGGGTTGGCCATGGAGGCTATGGTGGAGGCGGCCGGGCCGGAGTGCATCGTGCCCGGGCAGCAGGCGCCGCTGCGGCTGC
| ||| | | | | | || |||||| ||| || || ||||||| | || | ||||| |||||||||| ||||||||||||||||| ||||||||||||| | | ||| || |||||||||||||||||||||||||| ||||| ||||| || ||||
gtacgcatacacccctcctcccccctgcttgattgaggttgggttggtggggaaggctaattctggaggttggttggttgctccgcagCATCCGAATCCGATAGGGGAGGGGCTGGCCATGGAGGCGTTCGCGGAAGCCGCCGGGCCGGAGTGCATCGTGCCCGGACAGCAAGCGCCTCTAAGGCTCA
upper sequence: LOC_Os01g56890.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G127453_T02 (Zea mays), 3'ss of exon 1
----gtgcgttcccttttctcggttcggtttggttggtg--ggggaaggggg-taattctaattctgggct---tgctctgcagCATCCGGATCCGATAGGGGAGGGGTTGGCCATGGAGGCTATGGTGGAGGCGGCCGGGCCGGAGTGCATCGTGCCCGGGCAGCAGGCGCCGCTGCGGCTGC
|| || || | | | | | | || || | ||| || || | || ||||||| | || | ||||| |||||||||||||||||| || |||||| |||| |||||||| | | |||||| |||||||||||||||||||||||||| ||||| ||||| || ||||
gtacgtacgcacctgtcccccagcttgattggggttgtgttggtgaggaaggctaattctggaggttggttggttgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAGCCGGGCCGGAGTGCATCGTGCCCGGACAGCAAGCGCCTCTAAGGCTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88827005|gb|CI777570.1|CI777570EST: TCCGCGTCGCGCAGGACGATTATTCCGCCTACGCCCTCGCCGTCATGAAG CATCCGGATCCGATAGGGG
genomic: TCCGCGTCGCGCAGGACGATTATTCCGCCTACGCCCTCGCCGTCATGAAGgtgcgttccc ... tgctctgcagCATCCGGATCCGATAGGGG
EST:
gi|33797362|gb|CF324543.1|CF324543EST: GCCGTCATGAAG CATCCGGATCCGATAGGGGAGGGGTTGGCCATGGAGGCTATGGTGGAGGCG
genomic: GCCGTCATGAAGgtgcgttccc ... tgctctgcagCATCCGGATCCGATAGGGGAGGGGTTGGCCATGGAGGCTATGGTGGAGGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcggtttggttggtgggggaagggggtaattctaattctgggcttgctctgcagCATCCGGATCCGATAGGGGAGGGGTTGGCCATGGAGGCTATGGTGGAGGCGGCCGGGCCGGAGTGCATCGTGCCCGGGCAGCAGGCGCCGCTGCGGCTGC
ttctaat putative branch site (score: 2)
cttgctct putative PPT
taattctaatt TA-rich tract