1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcttgttctaaatttcggctaacactggatgtctatgtttaccttcgtatttattgaaggtatatactgctattgacactaaattttcattttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGG
species | Oryza sativa |
transcript | LOC_Os01g56820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTC TCCGTGAGTGATAACGATGTCCGCAAGATAGTGTTGTCTTATCTTATGCACEST: gi|40486859|gb|BX898175.1|BX898175
genomic: CCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCgtaagctctc ... ttttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCAC
EST: GGAT-CCCGCCTCTA-GAGAACGT- TCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACEST: gi|88428634|gb|CI599350.1|CI599350
genomic: GGATCCCCGCCTCTACGAGAACGTCgtaagctctc ... ttttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCAC
EST: CCGCCTCTCCCGCCTTGATGGACCTGGATCCCCGCCTCTAAGAGAACGTC TCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACEST: gi|117234957|gb|CT847981.1|CT847981
genomic: CCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCgtaagctctc ... ttttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCAC
EST: CCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTC TCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCAC
genomic: CCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCgtaagctctc ... ttttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCAC
tcgtatttattgaaggtatatactgctattgacactaaattttcattttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGG
cactaaa putative branch site (score: 4)
ttttcattttttcc CT-rich tract
actaaattttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttgttctaaatttcggctaacactggatgtctatgtttaccttcgtatttattgaaggtatatactgctattgacactaaattttcattttttccagTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA