1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgatgagtagttgctatgttattcagaacagcatatcattactcattagtaggatcaattatacacttcactcattaagtttgtttttgattccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTACAGCAATTGTGAAGAATTGAGCATACTGTTCAAAGATGGGTACAAGGAT
species | Oryza sativa |
transcript | LOC_Os01g56790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAG AAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTAEST: gi|88422853|gb|CI615153.1|CI615153
genomic: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAGgtatgtatgt ... attccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTA
EST: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAG AAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTAEST: gi|29628117|gb|CB633128.1|CB633128
genomic: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAGgtatgtatgt ... attccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTA
EST: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAG AAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTAEST: gi|88569400|gb|CI660575.1|CI660575
genomic: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAGgtatgtatgt ... attccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTA
EST: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAG AAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTA
genomic: GATCGGGATCTCGGCTCAGCGCGCTGCGGCGACCCCGCTGCAGCTTGCAGgtatgtatgt ... attccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTA
attagtaggatcaattatacacttcactcattaagtttgtttttgattccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTACAGCAATTGTGAAGAATTGAGCATACTGTTCAAAGATGGGTACAAGGAT
ttttgat putative branch site (score: 4)
tttttgattccttc CT-rich tract
attaagtttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatgagtagttgctatgttattcagaacagcatatcattactcattagtaggatcaattatacacttcactcattaagtttgtttttgattccttcagAAATTCTGGTTCAACACCAGCCACCTTTCACCAATCTAAAGAACTTGAGTACAGCAATTGTGAAGAATTGAGCATACTGTTCAAAGATGGGTACAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
ttgatga
- - - - - - tgctatg
- - - - - - - - - - - - - -aacagca