1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcccccctgcccccttcgcatcggtgtaatttgcgggtaatttgcagcatcttgttgactgatggtttgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCACTCCCAAGAAGGGGAAACCTTGCGTGGTCATGTTCGTTGGTTTGCAAG
species | Oryza sativa |
transcript | LOC_Os01g56600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAG GCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCEST: gi|88422690|gb|CI573852.1|CI573852
genomic: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAGgtgagccccc ... tgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
EST: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGGGCATCATCCAGCAG GCCGTCTTCACGGAGCTCTGCAAGATGTTGGATCCCGGGAAGCCTTCCTTCEST: gi|86891894|gb|CI310072.1|CI310072
genomic: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAGgtgagccccc ... tgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
EST: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAG GCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCEST: gi|88420692|gb|CI564528.1|CI564528
genomic: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAGgtgagccccc ... tgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
EST: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAG GCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCEST: gi|88392343|gb|CI612817.1|CI612817
genomic: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAGgtgagccccc ... tgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
EST: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAG GCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCEST: gi|88359738|gb|CI622428.1|CI622428
genomic: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAGgtgagccccc ... tgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
EST: ACCTCGAGACGCTCGCCGCCGGGACCAAAAAGCGGGGCATCATCCAGCAG GCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
genomic: ACCTCGAGACGCTCGCCGCCGGGACCAACAAGCGGCGCATCATCCAGCAGgtgagccccc ... tgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTC
ggtgtaatttgcgggtaatttgcagcatcttgttgactgatggtttgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCACTCCCAAGAAGGGGAAACCTTGCGTGGTCATGTTCGTTGGTTTGCAAG
taattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcccccctgcccccttcgcatcggtgtaatttgcgggtaatttgcagcatcttgttgactgatggtttgatggttagGCCGTCTTCACGGAGCTCTGCAACATGTTGGATCCCGGGAAGCCTTCCTTCACTCCCAAGAAGGGGAAACCTTGCGTGGTCATGTTCGTTGGTTTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG