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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttctgtattcttgtataatagtagaaattgacttacggcttctatacttgtacacacacccagtgcctgtttcttatatgttgttagtgaaataacagTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAAT

Basic information

species Oryza sativa
transcript LOC_Os01g56550.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56550.3 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 3'ss of exon 1
---ttttctgtattcttgtataatagtagaaattgacttacggcttctatacttgtacacacacccagtgcctgtttcttatatgttgttagtgaaataacagTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAAT
    ||| || |  | |   |  | ||   |||    |||  | || | |  ||||  |    |      ||| |  |||| ||| |  |      ||| |||||||  ||||| ||| ||   || ||   |   ||||  ||||| |||||||||||||| |||||||| |||||||| || |||||||| ||||||||  
agaatttttgcacccattgttggttgttctaat-atgttagagattatttg-ttgtgaattgtcttgccacct-tgccttacatgcttctttaatgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacttgtacacacacccagtgcctgtttcttatatgttgttagtgaaataacagTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAAT
                          tttcttatat  TA-rich tract