1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acaatatttacttgcctaattaggctaccggactatcaaaattggtctgaatttcttagtacagctccttaatgggatgttaaccgaatgttttctctagGTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGGCCATGCAGCTATGTCTTCCAAAATCCCGATCACCAG
species | Oryza sativa |
transcript | LOC_Os01g56400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAG GTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGGEST: gi|58695339|gb|CK084026.1|CK084026
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAGgttcttcatc ... ttttctctagGTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGG
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAG GTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGGEST: gi|58601719|gb|CK012247.1|CK012247
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAGgttcttcatc ... ttttctctagGTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGG
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAG GTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGG
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAGgttcttcatc ... ttttctctagGTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGG
tctgaatttcttagtacagctccttaatgggatgttaaccgaatgttttctctagGTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGGCCATGCAGCTATGTCTTCCAAAATCCCGATCACCAG
tgttaac putative branch site (score: 5)
tgttttctct putative PPT
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatatttacttgcctaattaggctaccggactatcaaaattggtctgaatttcttagtacagctccttaatgggatgttaaccgaatgttttctctagGTTTTGGCAGGATTTTTAAATCCTTCTTCTGGTACAGTGTATATTAACAGGCCATGCAGCTATGTCTTCCAAAATCCCGATCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - tacttgc
- - - - - - - - - - - -gctaccg
- - - - - - - - - - - - - - - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccgaa