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...tagttttctgtagtactggccatttattgttcttgactctctaatttccatggctgaatctacaatgtcctacttgactcatcccttttcatcaggtcagGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCT
species | Oryza sativa |
transcript | LOC_Os01g56230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAG GAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGEST: gi|88578737|gb|CI687685.1|CI687685
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... atcaggtcagGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTG
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|300215972|gb|HO088598.1|HO088598
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... atcaggtcagG--AG---TCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAGEST: gi|88337687|gb|CI632189.1|CI632189
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTG-A----AGgtattcgttc ... atcagg
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAGEST: gi|29660431|gb|CB656706.1|CB656706
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTG-A----AGgtattcgttc ... atcagg
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAG
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTG-A----AGgtattcgttc ... atcagg
ttccatggctgaatctacaatgtcctacttgactcatcccttttcatcaggtcagGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCT
acttgac putative branch site (score: 4)
ctcatcccttttcatc CT-rich tract
ttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttttctgtagtactggccatttattgttcttgactctctaatttccatggctgaatctacaatgtcctacttgactcatcccttttcatcaggtcagGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - -ttctgta
- - - - - - -tactggc
- - - - - - - - - - - - - ttgttct
- - - - - - - - - - - - - - - - - - - - - - - -ccatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg