Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcctagtcgccccaccggctcaccctctttgattaggtgtagccgagttaaagctcgtttttggcatcttgtgaggatttgttgcgttcgtttctgcagGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g55974.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55974.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 1
gttagtcctagtcgccccaccggctcaccctctttgattaggtgtagccgagttaaagctcgtttttggcatcttgtgaggatttgttgcgttcgtttctgcagGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAG
        | |||      |   | | ||||| ||    |    ||  | |||    |||||| ||  |  || ||||  |||| || ||| | |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||| ||||||
------gttcgtcaatgttct--cccgccctcgttagcgatccttatgccagtc--cgctcgtcttgagtctcctgtgcagATTCGTGGCGCTTGTTTGTGCAGATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88395592|gb|CI613114.1|CI613114
EST:     GCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGG                         GTATATCTCCTGGGACGAATACTTCATGGCGATAGCGTTCCTTTCGGCCAA
genomic: GCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGgttagtccta ... gtttctgcagGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttaaagctcgtttttggcatcttgtgaggatttgttgcgttcgtttctgcagGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAG
                                          ttcgtttct  CT-rich tract
                                atttgtt  TA-rich tract