Sequence
atgc intronic sequence ATGC exonic sequencegtacgcgcgagatctcggagttgaggacttctggttcactaggaatttttgtttgctttccttgatctggatggggagtttagtgcttgtgtttttttttgtttccttttggattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCACAGCGCCACGGCGTCGGCGCTCATGACGTCGCTCCTCGCTGCCCCTGCG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g55020.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86888910|gb|CI307968.1|CI307968EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
EST:
gi|88851458|gb|CI670898.1|CI670898EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggatggggagtttagtgcttgtgtttttttttgtttccttttggattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCACAGCGCCACGGCGTCGGCGCTCATGACGTCGCTCCTCGCTGCCCCTGCG
tttttttttgtttcct CT-rich tract
tgtttttttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcgcgagatctcggagttgaggacttctggttcactaggaatttttgtttgctttccttgatctggatggggagtttagtgcttgtgtttttttttgtttccttttggattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCACAGCGCCACGGCGTCGGCGCTCATGACGTCGCTCCTCGCTGCCCCTGCG
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