1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttccccaacataccatacagtctaaatttttcacccctcaagttcgttggtaatcaacagatgtaattttttgccacttatttaattcttatttttacagAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTG
species | Oryza sativa |
transcript | LOC_Os01g54040.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGACGACGCCGGCTCATCCTCCTCCTCCGACGTCGACACCTTTCTCAG AAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAA
genomic: GTCGACGACGCCGGCTCATCCTCCTCCTCCGAAGTCGACACCTTTCTCAGgtccaaacgc ... atttttacagAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAA
gttggtaatcaacagatgtaattttttgccacttatttaattcttatttttacagAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTG
atttaat putative branch site (score: 4)
ttcttattttt CT-rich tract
taattttttgccactt TA-rich tract