1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatatgtatccataggcgtatggaaaatgaaaaatgttgagcctatcacttcatgaaatcttcttttatgcttcctctgatttgcatgccacttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCGTGTTATACGTGTTCAGCTTGGAGGAAGGGAAAAGCGTGTTGTTAGTCAA
species | Oryza sativa |
transcript | LOC_Os01g53930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCCCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCCACCGG GGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCGEST: gi|58609886|gb|CK037919.1|CK037919
genomic: CACGCCCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCCACCGGgtaggcctcc ... acttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCG
EST: CACGCCCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCCACCGG GGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCGEST: gi|29641463|gb|CB646470.1|CB646470
genomic: CACGCCCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCCACCGGgtaggcctcc ... acttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCG
EST: CACGCCCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCCACCGG GGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCGEST: gi|58663006|gb|CK051692.1|CK051692
genomic: CACGCCCCGCTCAAGATGCTCATCAGCTACGTCGACAACCTCCCCACCGGgtaggcctcc ... acttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCG
EST: GCTACGTCGACAACCTCCCCACCGG GGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCG
genomic: GCTACGTCGACAACCTCCCCACCGGgtaggcctcc ... acttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCG
tcacttcatgaaatcttcttttatgcttcctctgatttgcatgccacttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCGTGTTATACGTGTTCAGCTTGGAGGAAGGGAAAAGCGTGTTGTTAGTCAA
ctctgat putative branch site (score: 4)
aaatcttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgtatccataggcgtatggaaaatgaaaaatgttgagcctatcacttcatgaaatcttcttttatgcttcctctgatttgcatgccacttgtgcagGGATGAGCACGGACTGTTCTATGCTCTCGATCTTGGGGGCACCAATTTCCGTGTTATACGTGTTCAGCTTGGAGGAAGGGAAAAGCGTGTTGTTAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA