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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaattcttggctcctctgtttcttgcacctctgcttctgtcactcagatgctgttgctctgacattgttttgttttctgaatattgcagGGAGGCATCGTGCAATTTAGGACCCTGATGCGCAGCGTATAAACTTTGGCTATTCAGGTGCCCTTCTCAGAGAAGGGGCACACCATCTTCGTTGCCCAAT

Basic information

species Oryza sativa
transcript LOC_Os01g52980.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86493430|gb|CI136063.1|CI136063
EST:     ACTTGGGGAAGAGCGTCCGCCCGCTCGTGATATATGACACCGTGTTTGAT                         GGAGGCATCGTGCAATTTAGGACCCTGATGCGCAGCGTATAAACTTTGGCT
genomic: ACTTGGGGAAGAGCGTCCGCCCGCTCGTGATATATGACACCGTGTTTGATgtaacaattc ... aatattgcagGGAGGCATCGTGCAATTTAGGACCCTGATGCGCAGCGTATAAACTTTGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtcactcagatgctgttgctctgacattgttttgttttctgaatattgcagGGAGGCATCGTGCAATTTAGGACCCTGATGCGCAGCGTATAAACTTTGGCTATTCAGGTGCCCTTCTCAGAGAAGGGGCACACCATCTTCGTTGCCCAAT
                      ctctgac  putative branch site (score: 3)
                                 ttttgtttt  TA-rich tract