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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatccatcagttacgcgcatcctcttgctcatctctccctacccacgcgctttttcctccaatttgaacaccctttgtttctcttctagacctggaagctcttctcttaatttgccttaaacctcaatactaatagcagtttgtttgttcccccagATCCGCCACTGCTGAACGGGGTGCTTTCGCCATGTCGAGGCTGCGGGCGCTGTGGCAAGCCTCCGTTAACGCCACCAGGCGAG

Basic information

species Oryza sativa
transcript LOC_Os01g52720.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcttaatttgccttaaacctcaatactaatagcagtttgtttgttcccccagATCCGCCACTGCTGAACGGGGTGCTTTCGCCATGTCGAGGCTGCGGGCGCTGTGGCAAGCCTCCGTTAACGCCACCAGGCGAG
                          tactaat  putative branch site (score: 1)
                                      tttgtttgttccccc  putative PPT
                        aatactaata  TA-rich tract