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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcaaagctgctctatttcgaaatgtgttaagctcatacagagtactgagtcgttctgattttctgatggtgttgttcgggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACTTTTATTGACTGCACACAAGGCCGTGAAGAATGCCCCTGTGGTTCAATCC

Basic information

species Oryza sativa
transcript LOC_Os01g52610.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88673723|gb|CI727836.1|CI727836
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89172096|gb|CI721155.1|CI721155
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTACA                         ATACTTGGTTGGGATGTC
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTC
EST: gi|88665387|gb|CI715543.1|CI715543
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88905424|gb|CI712723.1|CI712723
EST:     GCATCGACATNCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAAC
genomic: GCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCC-TAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAAC
EST: gi|88676135|gb|CI730248.1|CI730248
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88665469|gb|CI715625.1|CI715625
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88908672|gb|CI714814.1|CI714814
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88908640|gb|CI713198.1|CI713198
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88673080|gb|CI727195.1|CI727195
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88761602|gb|CI771158.1|CI771158
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATG
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATG
EST: gi|89171473|gb|CI720532.1|CI720532
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|87034270|gb|CI188894.1|CI188894
EST:     GGCATCGAGATCCCGC--TATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89172390|gb|CI721449.1|CI721449
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88677169|gb|CI731282.1|CI731282
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88674361|gb|CI728474.1|CI728474
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89172375|gb|CI721434.1|CI721434
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89171844|gb|CI720903.1|CI720903
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88674258|gb|CI728371.1|CI728371
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89172233|gb|CI721292.1|CI721292
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTT-CTAGCTGCCTACTGTCTCGCTCAAC
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTC-AGCTGCCTACTGTCTCGCTCAAC
EST: gi|88593360|gb|CI713314.1|CI713314
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88665510|gb|CI715666.1|CI715666
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88984109|gb|CI723667.1|CI723667
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88676063|gb|CI730176.1|CI730176
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88972292|gb|CI717033.1|CI717033
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|58603692|gb|CK014220.1|CK014220
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88666612|gb|CI718748.1|CI718748
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88669606|gb|CI723451.1|CI723451
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88972385|gb|CI717125.1|CI717125
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88672096|gb|CI726212.1|CI726212
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88669919|gb|CI724035.1|CI724035
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88672767|gb|CI726883.1|CI726883
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89171323|gb|CI720382.1|CI720382
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88672913|gb|CI727028.1|CI727028
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89172640|gb|CI721699.1|CI721699
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88674893|gb|CI729006.1|CI729006
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88668167|gb|CI722906.1|CI722906
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTNAGCTGCCCTACTGTCTCGCTCAAC
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCC-TACTGTCTCGCTCAAC
EST: gi|88904834|gb|CI712133.1|CI712133
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88904665|gb|CI711964.1|CI711964
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88395566|gb|CI613088.1|CI613088
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTATA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88674939|gb|CI729052.1|CI729052
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88954538|gb|CI718517.1|CI718517
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCCTACTGTCTCGCTCAAC
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCC-TACTGTCTCGCTCAAC
EST: gi|89171757|gb|CI720816.1|CI720816
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88675399|gb|CI729512.1|CI729512
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88675163|gb|CI729276.1|CI729276
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88675882|gb|CI729454.1|CI729454
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|88959616|gb|CI716982.1|CI716982
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
EST: gi|89172622|gb|CI721681.1|CI721681
EST:     GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGA                         ATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT
genomic: GGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 61 (upstream exon), 41 (downstream exon)
Score: 5

CAATGGCTCTAATGATCTCTGCCAAGCAGCGGGGTAGTCTCAAGATCTTCGGCATCGAGATCCCGCTTTATGCCAATTGGTCTTTCTCTGATTCCCTAGAgtaagtatca ... gggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACTTTTATTGACTGCACACAAGGCCGTGAAGAATGCCCCTGTGGTTCAATCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatacagagtactgagtcgttctgattttctgatggtgttgttcgggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACTTTTATTGACTGCACACAAGGCCGTGAAGAATGCCCCTGTGGTTCAATCC
                            ttctgat  putative branch site (score: 5)
                       tgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatcaaagctgctctatttcgaaatgtgttaagctcatacagagtactgagtcgttctgattttctgatggtgttgttcgggatttcagATACTTGGTTGGGATGTCTGCAGTTTCAGCTGCCTACTGTCTCGCTCAACTTTTATTGACTGCACACAAGGCCGTGAAGAATGCCCCTGTGGTTCAATCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA