1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgacatgtgtttctttttctataaattagtttcaacaatattcagtttgatctggacacgtttatttgctgcctaatgcatccaatgatcataattcagGAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATGGGCGCATGATAGGTTTTATGAGATGAATTCCCATCATGATAGGCTTTAT
species | Oryza sativa |
transcript | LOC_Os01g52140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGATGACCGTTTCCGTGACCCGGAGAATGGCAGGCACGGGAGCCAAAG GAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATGEST: gi|58669250|gb|CK057936.1|CK057936
genomic: CACGATGACCGTTTCCGTGACCCGGAGAATGGCAGGCACGGGAGCCAAAGgttctagctt ... cataattcagGAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATG
EST: CACGATGACCGTTTCCGTGACCCGGAGAATGGCAGGCACGGGAGCCAAAG GAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATGEST: gi|58663018|gb|CK051704.1|CK051704
genomic: CACGATGACCGTTTCCGTGACCCGGAGAATGGCAGGCACGGGAGCCAAAGgttctagctt ... cataattcagGAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATG
EST: CACGATGACCGTTTCCGTGACCCGGAGAATGGCAGGCACGGGAGCCAAAG GAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATG
genomic: CACGATGACCGTTTCCGTGACCCGGAGAATGGCAGGCACGGGAGCCAAAGgttctagctt ... cataattcagGAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATG
gtttgatctggacacgtttatttgctgcctaatgcatccaatgatcataattcagGAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATGGGCGCATGATAGGTTTTATGAGATGAATTCCCATCATGATAGGCTTTAT
gcctaat putative branch site (score: 3)
atcataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacatgtgtttctttttctataaattagtttcaacaatattcagtttgatctggacacgtttatttgctgcctaatgcatccaatgatcataattcagGAAAAATTTCGGTGGCCAAAAGTTATGGTATCCTAAAGATGATAACGTATGGGCGCATGATAGGTTTTATGAGATGAATTCCCATCATGATAGGCTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - catgtgt
- - - - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatcc