Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgtcctcgcccaaatccctcccccgaaaaccccgcgagtttcttcaatagctcacccggtttcgttcttgcggcttcggtttgatttcccagGTGAAGCCGCAGAAGAAGAGCAGCAACAAGTGGGTGTGCGTGGTGTGCAACCAGCGCCAGTCCGTGATGCGCGTCCACGCCCGCGGGCACCGCGCCGCCG

Basic information

species Oryza sativa
transcript LOC_Os01g51850.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51850.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G107985_T02 (Zea mays), 3'ss of exon 3
gtgcgcgtcctcgcccaaatccctcccccgaaaaccc-cgcgagtttcttcaatagctcacccggtttcgttcttgcggcttcggtttgatttcccagGTGAAGCCGCAGAAGAAGAGCAGCAACAAGTGGGTGTGCGTGGTGTGCAACCAGCGCCAGTCCGTGATGCGCGTCCACGCCCGCGGGCACCGCGCCGCCG
|||| |  | | |  |   | |  |  | | |   |  | | |    |      | || |   ||||  |||  | ||| || | |||||  || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | |  ||||| ||| | ||  | || || || |
gtgcacaactttgtgctgctgctgcagctggatctctgctcaaaacccgattccaactgatatggtt--gtttct-cggttttgctttga--tctcagGTGAAGCAGCAGAAGAAGAGCAGCAACAAGTGGGTGTGTGTGGTGTGCAACCAGCGTCAGTCTGTGCTTCATGTCCATGCCAGGGGCTATCGTGCTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88693432|gb|CI737007.1|CI737007
EST:     CGACGAGTCTCTTCCTCGCGCTGCAGTGCGTCCAGTGCTCCACTATGCAG                         GTGAAGCCGCAGAAGAAGAGCAGCAACAAGTGGGTGTGCGTGGTGTGCAAC
genomic: CGACGAGTCTCTTCCTCGCGCTGCAGTGCGTCCAGTGCTCCACTATGCAGgtgcgcgtcc ... gatttcccagGTGAAGCCGCAGAAGAAGAGCAGCAACAAGTGGGTGTGCGTGGTGTGCAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttcaatagctcacccggtttcgttcttgcggcttcggtttgatttcccagGTGAAGCCGCAGAAGAAGAGCAGCAACAAGTGGGTGTGCGTGGTGTGCAACCAGCGCCAGTCCGTGATGCGCGTCCACGCCCGCGGGCACCGCGCCGCCG
                                               tttccc  CT-rich tract
                                          tttgattt  TA-rich tract