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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctgtgccccgcgcgccgcccggattgggttgccgccctccgggtttttcgggtttttttgattatttcgctatggagttcatggtttgatttctgttgtgggggttgtttgattcttgcgcagGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGT

Basic information

species Oryza sativa
transcript LOC_Os01g51210.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51210.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G008726_T02 (Zea mays), 3'ss of exon 1
gtaatgctgtgccccgcgcgccgcccggattgggttgccgccctccgggtttttcgggtttttttgattatttcgcta----tggagttcatggtttgatttctgttgtgggggttgtttgattcttgcgcagGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGT
|||||||   ||||   ||   ||   |   | |  |||||  |||    |||  |  ||   | |||   |     |    ||  | ||   |   |       || || |||||  | |  |||   ||||||| |||  |||||||| ||||||||||| ||||| ||||||||| | |||||| |||||||||||||||| |||| |||||||||| |||| |||||  
gtaatgcgccgcccatggcaaggctgcgcccgcg--gccgct-tccaaagtttctgatttggctcgatcgctcgatcacgcctgacgctccgtggccggacgggattctgcgggtt-ctcgcctct---gcagGTGGCGAAGGGGATCGATTTGGTCTACGGCGGCGGGAGCGTCGGGCTCATGGGCCTGATCGCGCAGACGGTCCTTGGTGGCGGCTGCAGTGTCCTCGG--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatggagttcatggtttgatttctgttgtgggggttgtttgattcttgcgcagGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGT
                                      gtttgat  putative branch site (score: 5)
                                            ttcttgc  CT-rich tract
                tttgattt  TA-rich tract