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...tttattgtgtattgatatcagaatcatacccacagaaattggacatacagtatatttgagtatgttaaagtagttgacattttttttttatccggagcagATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTCATTGATAGTTTCAAGATGTTGAAGGGCACTGATGTTCTGAATAAGGAGG
species | Oryza sativa |
transcript | LOC_Os01g50760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGACCCGGCCTTCGAGTTCACCGACGAGTCGCTCCAGTGGATCGACCGC ATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTCEST: gi|29684521|gb|CB680796.1|CB680796
genomic: AGGACCCGGCCTTCGAGTTCACCGACGAGTCGCTCCAGTGGATCGACCGCgtaatgctct ... tccggagcagATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTC
EST: AGGACCCGGCCTTCGAGTTCACCGACGAGTCGCTCCAGTGGATCGACCGC ATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTC
genomic: AGGACCCGGCCTTCGAGTTCACCGACGAGTCGCTCCAGTGGATCGACCGCgtaatgctct ... tccggagcagATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTC
tacagtatatttgagtatgttaaagtagttgacattttttttttatccggagcagATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTCATTGATAGTTTCAAGATGTTGAAGGGCACTGATGTTCTGAATAAGGAGG
agttgac putative branch site (score: 34)
cattttttttttatcc CT-rich tract
ttaaagtagttgacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattgtgtattgatatcagaatcatacccacagaaattggacatacagtatatttgagtatgttaaagtagttgacattttttttttatccggagcagATGCTGGATTACAATGTGCTCGGAGGAAAGTGCAACCGCGGGATCTCTGTCATTGATAGTTTCAAGATGTTGAAGGGCACTGATGTTCTGAATAAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - -tgtattg
- - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - -catacag