Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|701072|gb|D47363.1|D47363EST: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAG GGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
genomic: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGgtcgtaagct ... tgtgctccagGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
EST:
gi|88742125|gb|CI765633.1|CI765633EST: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAG GGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
genomic: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGgtcgtaagct ... tgtgctccagGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
EST:
gi|88737170|gb|CI760678.1|CI760678EST: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAG GGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
genomic: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGgtcgtaagct ... tgtgctccagGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
EST:
gi|88735991|gb|CI759499.1|CI759499EST: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAG GGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
genomic: CATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGgtcgtaagct ... tgtgctccagGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcagtgtctcatcgctgacccgtgccgtgcaacgatcttcttctgtgctccagGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGGGGCAGCTTCTCGCAGCAGGAGGAGGACGCCAT
cgctgac putative branch site (score: 3)
tcttcttctgtgctcc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcgtaagctgctcctgctctgctcgatccgctctttgcatgcatgtgtctcagtgtctcatcgctgacccgtgccgtgcaacgatcttcttctgtgctccagGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGGGGCAGCTTCTCGCAGCAGGAGGAGGACGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA