1 5' 3' | 2 5' 3' | 3 5' 3' |
...atactccacccctctattaactagtttcactgggcataattgttctttattgcattccacaaattaaatttcatttctaacaattgttttctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAGATTTTGTAAGAAGGTAGATTTAGAAGTTCTGCCAAGCAGAAGTGACGT
species | Oryza sativa |
transcript | LOC_Os01g49310.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG AATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAEST: gi|25797302|gb|CA753263.1|CA753263
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG AATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAEST: gi|88451550|gb|CI565603.1|CI565603
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG AATCTTAAGCCAAATCTTTGAAGCCGATCATGCCAGAGTCTTCTACCAACAEST: gi|88370695|gb|CI592461.1|CI592461
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG AATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAEST: gi|29625012|gb|CB630023.1|CB630023
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG AATCTTAAGCCAAATCTTTGAAGCCGACAATGCCAGAGTCTTCTACCAACA
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
tttattgcattccacaaattaaatttcatttctaacaattgttttctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAGATTTTGTAAGAAGGTAGATTTAGAAGTTCTGCCAAGCAGAAGTGACGT
ttctaac putative branch site (score: 1)
ttgttttctttttgc putative PPT
aaattaaatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactccacccctctattaactagtttcactgggcataattgttctttattgcattccacaaattaaatttcatttctaacaattgttttctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAGATTTTGTAAGAAGGTAGATTTAGAAGTTCTGCCAAGCAGAAGTGACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT