1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgaaggtaaaacactgagtatgacaaaatttgaacataacaaaaatgcatttatccttatattgatccatattatgatagataagattcgattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTGTAAGAAAGCTATCTGTGATGAAGTAGAAATCGTGAAACAGCTGGATGCT
species | Oryza sativa |
transcript | LOC_Os01g49000.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAA GCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTGEST: gi|29624329|gb|CB629340.1|CB629340
genomic: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAAgtgagctccc ... gattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTG
EST: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAA GCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTGEST: gi|55413627|gb|CV726003.1|CV726003
genomic: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAAgtgagctccc ... gattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTG
EST: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAA GCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTGEST: gi|29643887|gb|CB648894.1|CB648894
genomic: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAAgtgagctccc ... gattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTG
EST: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAA GCATCTAACTACTTTGGATGACGCTCTGATTCACACAAAATGGCTGAACTGEST: gi|88332930|gb|CI639778.1|CI639778
genomic: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAAgtgagctccc ... gattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTG
EST: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAA GCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTG
genomic: TACGACACCTCCATCATCTTCTTCGACGGCGCCATCGCCCAGATCAACAAgtgagctccc ... gattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTG
atgcatttatccttatattgatccatattatgatagataagattcgattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTGTAAGAAAGCTATCTGTGATGAAGTAGAAATCGTGAAACAGCTGGATGCT
tattgat putative branch site (score: 14)
atattatgatagataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaaggtaaaacactgagtatgacaaaatttgaacataacaaaaatgcatttatccttatattgatccatattatgatagataagattcgattgtgcagGCATCTAACTACTTTGGATGACGCTCTGATTCGCACAAAATGGCTGAACTGTAAGAAAGCTATCTGTGATGAAGTAGAAATCGTGAAACAGCTGGATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - gtaaaaca
- - - - - - - - - - - gacaaaa
- - - - - - - - - - - - - - - ttgaaca
- - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agataaga