1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgtaggattttagttgcagtcttgcagaggagtgtcgtagttttgatacacagtatttgtatgcaaattaatcggagttcttacaccttttgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG
species | Oryza sativa |
transcript | LOC_Os01g48370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAG CCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGEST: gi|9866208|gb|AU101958.1|AU101958
genomic: GGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGgtgaggaaag ... tgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAG
EST: CGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAG CCAGGGCCAAGGGA-TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGEST: gi|3762296|gb|C99544.1|C99544
genomic: CGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGgtgaggaaag ... tgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAG
EST: GCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAG CCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGEST: gi|15008750|gb|AU223138.1|AU223138
genomic: GCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGgtgaggaaag ... tgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAG
EST: GCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAG CCAGGGCCAAGGGA-TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGEST: gi|29663262|gb|CB659537.1|CB659537
genomic: GCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGgtgaggaaag ... tgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAG
EST: GGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAG CCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAG
genomic: GGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGgtgaggaaag ... tgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAG
atacacagtatttgtatgcaaattaatcggagttcttacaccttttgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG
ttcttac putative branch site (score: 44)
ttcttacacctttt CT-rich tract
aaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtaggattttagttgcagtcttgcagaggagtgtcgtagttttgatacacagtatttgtatgcaaattaatcggagttcttacaccttttgtcaagcagCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - gttgcag
- - - - - - - - - -tcttgca
- - - - - - - - - - - - - - - - - - - - - - gatacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgc