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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcctttgcattctagttgctggcctgaattctgtcaattcttcaatttaatgacccttttctcctactgagcttctctaatttcttgatttcgacaatgtctgttcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATTGTTGACGGGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g46750.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46750.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G002614_T01 (Zea mays), 3'ss of exon 1
gtttgtcctttgcattctagttgctggcctgaattctgtcaattcttcaatttaatgacccttttctcctactgagcttctctaatttcttgatttcgacaatgtctg--ttcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATTGTTGACGGGAAG
              ||  | ||| || | |   || |      |||| | || ||| |   |  | | ||  ||    ||||  | | ||  |||||   | | | ||  | |||   ||| ||||||||||||||||  ||| |||||||||||||||| || |||||||||||||| ||||||
-----------ctcttaaatttggtgacatatttttt------tctttatttcaataaatatagtgttctcttg----tctcccaatactgaatttctttagtctgtggatccttacacagCATGGCCGTGGAGAAGTATCCAAACAACAGAATGCTTGGCCATCGTGAGATTGTTGATGGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88574539|gb|CI666308.1|CI666308
EST:     GTCTCTTTCTGGATATGGATAGGAAAGTACAGAGGGAATTAACAGGATTG                         AATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
genomic: GTCTCTTTCTGGATATGGATAGGAAAGTACAGAGGGAATTAACAGGATTGgtttgtcctt ... tcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
EST: gi|88307009|gb|CI639440.1|CI639440
EST:     GTCTCTTTCTGGATATGGATAGGAAAGTACAGAGGGAATTAACAGGATTG                         AATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
genomic: GTCTCTTTCTGGATATGGATAGGAAAGTACAGAGGGAATTAACAGGATTGgtttgtcctt ... tcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcctactgagcttctctaatttcttgatttcgacaatgtctgttcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATTGTTGACGGGAAG
                                        tctgttctt  CT-rich tract
                  taatttcttgattt  TA-rich tract