1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...gttgctggcctgaattctgtcaattcttcaatttaatgacccttttctcctactgagcttctctaatttcttgatttcgacaatgtctgttcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATTGTTGACGGGAAG
species | Oryza sativa |
transcript | LOC_Os01g46750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTTCCCGCCGCCCGTCGCCGGCCTGGACTGCTGCTACGACATCTTCCG AATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATEST: gi|88739149|gb|CI762657.1|CI762657
genomic: GGCTTCCCGCCGCCCGTCGCCGGCCTGGACTGCTGCTACGACATCTTCCGgtgagtggct ... tcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
EST: GGCTTCCCGCCGCCCGTCGCCGGCCTGGACTGCTGCTACGACATCTTCCG AATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATEST: gi|58691021|gb|CK079708.1|CK079708
genomic: GGCTTCCCGCCGCCCGTCGCCGGCCTGGACTGCTGCTACGACATCTTCCGgtgagtggct ... tcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
EST: CTGGACTGCTGCTACGACATCTTCCG AATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
genomic: CTGGACTGCTGCTACGACATCTTCCGgtgagtggct ... tcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGAT
tctcctactgagcttctctaatttcttgatttcgacaatgtctgttcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATTGTTGACGGGAAG
tctgttctt CT-rich tract
taatttcttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctggcctgaattctgtcaattcttcaatttaatgacccttttctcctactgagcttctctaatttcttgatttcgacaatgtctgttcttgtgcagAATGGCCGTGGAGAAGTTCCCAGACAACAGAATGCTTGGTCACCGTGAGATTGTTGACGGGAAG
- tgctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -agcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtctg