1 5' 3' |
...ccccgtcgacacgaggaggtcgccgtacctcaagtcgccggggaaccaggcggtgtggcacagcctcgagtgctacatgcacggcgtcgccggggcgcagGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGCGCTGGTGAACAAGAATGTGGACGCGCTCAAGGAGGAGTACCACGTCCCGCCGTCGT
species | Oryza sativa |
transcript | LOC_Os01g46370.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAG GGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGEST: gi|89169941|gb|CI039218.1|CI039218
genomic: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGgcgtcgaccc ... cggggcgcagGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTG
EST: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAG GGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTG
genomic: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGgcgtcgaccc ... cggggcgcagGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGCGCTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccgtcgacacgaggaggtcgccgtacctcaagtcgccggggaaccaggcggtgtggcacagcctcgagtgctacatgcacggcgtcgccggggcgcagGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGCGCTGGTGAACAAGAATGTGGACGCGCTCAAGGAGGAGTACCACGTCCCGCCGTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - -ccaggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc