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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaatgagaaaaaacgatttttaagagaaatgtactttcttgtatttatgccaaatggcaaggactgaaagggaaaaactaagaaagggaacgttacagTAAGGCTCTGTGGGGACTGGGGACTTCAGAGAAACGTGAACCCTGCTTCCTTCCTCTGCATGAACATAACACCAGAGGTTTCCAGCCTTTCACACAGTTG

Basic information

species Oryza sativa
transcript LOC_Os01g44220.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680978|gb|CB677253.1|CB677253
EST:     ATGTTTTATAGGCAAGAAAACTGGACTGCCTTGGAGAGATGAGTTCAAAG                         TAAGGCTCTGTGGGGACTGGGGACTTCAGAGAAACGTGAACCCTGCTTCCT
genomic: ATGTTTTATAGGCAAGAAAACTGGACTGCCTTGGAGAGATGAGTTCAAAGgtacaacatt ... aacgttacagTAAGGCTCTGTGGGGACTGGGGACTTCAGAGAAACGTGAACCCTGCTTCCT
EST: gi|58688517|gb|CK077204.1|CK077204
EST:     ATGTTTTATAGGCAAGAAAACTGGACTGCCTTGGAGAGATGAGTTCAAAG                         TAAGGCTCTGTGGGGACTGGGGACTTCAGAGAAACGTGAACCCTGCTTCCT
genomic: ATGTTTTATAGGCAAGAAAACTGGACTGCCTTGGAGAGATGAGTTCAAAGgtacaacatt ... aacgttacagTAAGGCTCTGTGGGGACTGGGGACTTCAGAGAAACGTGAACCCTGCTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgccaaatggcaaggactgaaagggaaaaactaagaaagggaacgttacagTAAGGCTCTGTGGGGACTGGGGACTTCAGAGAAACGTGAACCCTGCTTCCTTCCTCTGCATGAACATAACACCAGAGGTTTCCAGCCTTTCACACAGTTG
                             aaaaactaa  TA-rich tract