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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcagaaatatcaactgatcttctgaatccatatcatctctctgtttctagctaatccacctgaccttatttttgatattttgtaccatgcatctacacagGAACAAGCCCAAGAAGAAAGCTGAGAAGAGGCAGCGGCAGCCTCGCGTGGCGTTCCTCACCAAGAGCGAGGTTGATCACCTCGAGGACGGCTACCGGTGG

Basic information

species Oryza sativa
transcript LOC_Os01g43650.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g43650.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AC198725.4_FGT009 (Zea mays), 3'ss of exon 1
-gcagaaatatcaactgatcttctgaatccatatcatctctctgtttctagctaatccacctgaccttatttttgatattttgtac-catgcatctaca-cagGAACAAGCCCAAGAAGAAAGCTGAGAAGAGGCAGCGGCAGCCTCGCGTGGCGTTCCTCACCAAGAGCGAGGTTGATCACCTCGAGGACGGCTACCGGTGG
   | |  |  ||| |||   |   ||   |||| |  |||   | |  |   | |  |   |    |  | |  ||||| |||    || ||| || | |||||||||  |||||||||| ||||||||||||||| ||||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||| ||||||
ctaaaacgtgacaaatgaagatactaacatatattagttct---tattaaaggactggattggcgtctgatatatatattatgtgtatattcatatataacagGAACAAATCCAAGAAGAAGGCTGAGAAGAGGCAGAGGCAGCCGCGCGTTGCCTTCCTCACCAAGAGCGAGGTGGATCACCTTGAGGACGGCTATCGGTGG

upper sequence: LOC_Os01g43650.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G145554_T01 (Zea mays), 3'ss of exon 1
gcagaaatatcaactgatcttctgaatccatatc---atctctctgtttctagctaatccacctgaccttatttttgatattttgtaccatgcatctacacagGAACAAGCCCAAGAAGAAAGCTGAGAAGAGGCAGCGGCAGCCTCGCGTGGCGTTCCTCACCAAGAGCGAGGTTGATCACCTCGAGGACGGCTACCGGTGG------
|  |  | || || | |||| ||  ||| |   |   | ||| ||     ||  || | |   |   |  | ||    |   || |   ||  |     |||||||||   |||||||||| || |||||||||      ||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||      
ggcgtgacatgaaat-atctacttcatctagccctcgagctcactagcatta-ttagttcgtattgtcgcacttg-actggcttctgatatatactacaacagGAACAGATCCAAGAAGAAGGCCGAGAAGAGG------CAGCCCCGCGTTGCCTTCCTCACCAAGAGCGAGGTGGATCACCTTGAGGACGGCTACCGGTGGCGCAAG

upper sequence: LOC_Os01g43650.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv10s0003g02810.t01 (Vitis vinifera), 3'ss of exon 1
gcagaaatatcaactgatcttctg---aatccatatcatct--------ctctgtttctagcta-atccacctgaccttatttttgatattttgtaccatgcatctacacagGAACAAGCCCAAGAAGAAAGCTGAGAAGAGGCAGCGGCAGCCTCGCGTGGCGTTCCTCACCAAGAGCGAGGTTGATCACCTCGAGGACGGCTACCGGTGG
| |  | |      |  |    ||   | | ||  | | ||         ||||    || | |  ||  ||  |  | ||  | |||   | ||    || |||  ||||||||||||||||||||||| || ||||| |||||  |  |||| ||  | || ||| | || ||||| ||||| ||||| || ||||| || ||  | |||
gtaagacttctggttctttccttgtagagttcacgtaaactgatatgtcttctgaaattatccatgtctgccaaatgtaatgctcgattcatggtgatttg-atc--cacagGAACAAGCCCAAGAAGAAGGCAGAGAAAAGGCAAAGAGAGCCACGGTTCGCCTTCATGACTAAGAGTGAGGTCGATCATCTAGAGGATGGATATAGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagctaatccacctgaccttatttttgatattttgtaccatgcatctacacagGAACAAGCCCAAGAAGAAAGCTGAGAAGAGGCAGCGGCAGCCTCGCGTGGCGTTCCTCACCAAGAGCGAGGTTGATCACCTCGAGGACGGCTACCGGTGG
                    ttatttttgatatttt  TA-rich tract