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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgccaccctcctgctccttcactcctgacggcatctctttcatccccaacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG

Basic information

species Oryza sativa
transcript LOC_Os01g43630.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g43630.3 (Oryza sativa), 3'ss of exon 1
lower sequence: AC198725.4_FGT007 (Zea mays), 3'ss of exon 1
gtgcgccaccctcctgctccttcactcctgacggcatctctttcatccccaacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
     | ||||||| | |    | ||  |  | ||  | |   |     |  ||     |||||||     | |     ||  |   | || |    |  |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| || |||| ||||||  | || || |||||| |||||
-----caaccctccgggtttgccgctgttccccgctccaccacccgaaacccccctcctcctaaacgctaaactaacctggcaatcggcgactctgtgaatgcagGAAGAGCGAGGTGACGGATCTGAAGCAGCAGCTGCGGCAGCTTGCCGGGAGCCGCGCTCCCGATGCGGACGCCCAGCGTCGTGATGTATTCAAGAGGGTG

upper sequence: LOC_Os01g43630.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G029077_T01 (Zea mays), 3'ss of exon 1
gtgcgccaccctcctgctccttcactcctgacggcatctctttcatccccaacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
||   || |  |||  |  || | |  |   ||  | |||  || ||||      |||||||||||| || |       ||  | |   || |    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||  | || ||||||||| |||||
gttttcctctgtccc-ccgctccgccacc--cgaaacctccctcttccc------gaaccctaaactaacta-------ggcaattgacgactctgtgagtgcagGAAGAGCGAGGTGGCAGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCTCCCGATGCGGACGACCAGCGCCGTGATGTCTTCAAGAGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88358891|gb|CI619395.1|CI619395
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGTCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88433163|gb|CI569832.1|CI569832
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGT-CCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88726588|gb|CI750243.1|CI750243
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88338233|gb|CI655422.1|CI655422
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88351726|gb|CI617451.1|CI617451
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88363768|gb|CI609125.1|CI609125
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88346550|gb|CI623007.1|CI623007
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88311849|gb|CI577455.1|CI577455
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88335916|gb|CI645517.1|CI645517
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88346957|gb|CI628627.1|CI628627
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88692585|gb|CI736160.1|CI736160
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88723155|gb|CI746665.1|CI746665
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88727748|gb|CI749550.1|CI749550
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88357795|gb|CI625046.1|CI625046
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88358817|gb|CI649366.1|CI649366
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88360917|gb|CI625223.1|CI625223
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGAGAGGTGGTGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88402596|gb|CI598823.1|CI598823
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88343229|gb|CI627189.1|CI627189
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88354710|gb|CI613988.1|CI613988
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88407689|gb|CI607823.1|CI607823
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88328072|gb|CI649870.1|CI649870
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCACCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88411006|gb|CI606225.1|CI606225
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88694122|gb|CI738160.1|CI738160
EST:     CGACGGCGCCCACGGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CGACGGCGCCCAC-GGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88362506|gb|CI623846.1|CI623846
EST:     CCGACGGCGCCCACGGCGGGGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGA
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGT-GGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGA
EST: gi|88398595|gb|CI598560.1|CI598560
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88572439|gb|CI664010.1|CI664010
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGNAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88307302|gb|CI641940.1|CI641940
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88422713|gb|CI573875.1|CI573875
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88327998|gb|CI648404.1|CI648404
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88383906|gb|CI631796.1|CI631796
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88328881|gb|CI646956.1|CI646956
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88371024|gb|CI595136.1|CI595136
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88725260|gb|CI748519.1|CI748519
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGNAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88356164|gb|CI627612.1|CI627612
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88316991|gb|CI625628.1|CI625628
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGGGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88315618|gb|CI615490.1|CI615490
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88427159|gb|CI586707.1|CI586707
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88729142|gb|CI752652.1|CI752652
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88695266|gb|CI739304.1|CI739304
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88300512|gb|CI587316.1|CI587316
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88385897|gb|CI568565.1|CI568565
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
EST: gi|88431417|gb|CI576947.1|CI576947
EST:     CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG                         GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
             aactgac  putative branch site (score: 2)
                     aatttt  TA-rich tract