Sequence
atgc intronic sequence ATGC exonic sequencegtgcgccaccctcctgctccttcactcctgacggcatctctttcatccccaacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g43630.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g43630.3 (Oryza sativa), 3'ss of exon 1
lower sequence: AC198725.4_FGT007 (Zea mays), 3'ss of exon 1
gtgcgccaccctcctgctccttcactcctgacggcatctctttcatccccaacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
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-----caaccctccgggtttgccgctgttccccgctccaccacccgaaacccccctcctcctaaacgctaaactaacctggcaatcggcgactctgtgaatgcagGAAGAGCGAGGTGACGGATCTGAAGCAGCAGCTGCGGCAGCTTGCCGGGAGCCGCGCTCCCGATGCGGACGCCCAGCGTCGTGATGTATTCAAGAGGGTG
upper sequence: LOC_Os01g43630.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G029077_T01 (Zea mays), 3'ss of exon 1
gtgcgccaccctcctgctccttcactcctgacggcatctctttcatccccaacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
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gttttcctctgtccc-ccgctccgccacc--cgaaacctccctcttccc------gaaccctaaactaacta-------ggcaattgacgactctgtgagtgcagGAAGAGCGAGGTGGCAGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCTCCCGATGCGGACGACCAGCGCCGTGATGTCTTCAAGAGGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88402596|gb|CI598823.1|CI598823EST: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGG GAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
genomic: CCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGgtgcgccacc ... aggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacctgaaccctaaactgaccaattttggggggacttgtgagttgaggtgtgcagGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTG
aactgac putative branch site (score: 2)
aatttt TA-rich tract