1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atccattgcatgtttctgtttgatatctcttgtgtttgctctgtggtttctgttaccacatccatttgtttgacctgggttcgttatggtgttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGG
species | Oryza sativa |
transcript | LOC_Os01g43250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAG GCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGEST: gi|88421453|gb|CI618577.1|CI618577
genomic: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGgtcaggttta ... gttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGG
EST: TCTACGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAG GCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGAATATGGGEST: gi|29658631|gb|CB654906.1|CB654906
genomic: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGgtcaggttta ... gttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGG
EST: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAG GCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGEST: gi|88739832|gb|CI761342.1|CI761342
genomic: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGgtcaggttta ... gttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGG
EST: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAG GCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGG
genomic: TCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGgtcaggttta ... gttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGG
gtttctgttaccacatccatttgtttgacctgggttcgttatggtgttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGG
gtttgac putative branch site (score: 7)
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccattgcatgtttctgtttgatatctcttgtgtttgctctgtggtttctgttaccacatccatttgtttgacctgggttcgttatggtgttgagtcagGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - tgcatgt
- - - - - - - -ctgtttg
- - - - - - - - tgtttga
- - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catccat