Sequence
atgc intronic sequence ATGC exonic sequence...cttagaatacattcatttacaaaaagtgccgtgggttctataaagcatgacgatgtgtttcagctgtactgagatttgcttgtttattgttatgtttcagGAAATGGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCAC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g42950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g42950.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 1
--cttagaatacattcatttacaaaaagtgccgtgggttctataaagcatgacgatgtgtttcagctgtactgagatttgcttgtttattg-ttatgtttcagGAAATGGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCAC
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tgtattgagtggtgccctagtcatgacacttgattgtatagccaaaccatgatcatatttttcagttcaac---aatttgctaatttctttcttgtgtttaagGAAATGGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33678979|gb|CF307218.1|CF307218EST: TCGGCTGCCTCGACAACGTCGGCAAGGTGCCCAAGGAGCTCAAGGGCATG GAAATGGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACA
genomic: TCGGCTGCCTCGACAACGTCGGCAAGGTGCCCAAGGAGCTCAAGGGCATGgtacggagcg ... tatgtttcagGAAATGGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgacgatgtgtttcagctgtactgagatttgcttgtttattgttatgtttcagGAAATGGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCAC
tttattgttatgttt TA-rich tract