1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcacccataaataaatctggggctagtatataagtaatccggtgtaattctctctctctctctctgagcataagtaacctctgttgctaacttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTAGAGGTGCTGGTTATGTTCACTGTACTTGTTGCCAGACAATGAACTATGT
species | Oryza sativa |
transcript | LOC_Os01g42710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACTCTG-GCCAATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAG AAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTAEST: gi|87013966|gb|CI271357.1|CI271357
genomic: GACTCTGTGCC-ATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAGgttagtatat ... acttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTA
EST: GGACTCTGTGCCATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAG AAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTAEST: gi|86480497|gb|CI123130.1|CI123130
genomic: GGACTCTGTGCCATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAGgttagtatat ... acttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTA
EST: GGACTCTGTGCCATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAG AAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTAEST: gi|3767485|gb|AU031595.1|AU031595
genomic: GGACTCTGTGCCATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAGgttagtatat ... acttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTA
EST: GGACTCTGTGCCATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAG AAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGGCTTATTTT
genomic: GGACTCTGTGCCATTGGTGCCACCACCACCTTCCCCTTACCTAAATAAAGgttagtatat ... acttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTG-CTTATTTT
taattctctctctctctctctgagcataagtaacctctgttgctaacttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTAGAGGTGCTGGTTATGTTCACTGTACTTGTTGCCAGACAATGAACTATGT
tgctaac putative branch site (score: 5)
ataagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacccataaataaatctggggctagtatataagtaatccggtgtaattctctctctctctctctgagcataagtaacctctgttgctaacttgtacagAAGTAGGTCAAATGGTATGTGGAAGCTGCCGTATTCTTCTTGCTTATTTTAGAGGTGCTGGTTATGTTCACTGTACTTGTTGCCAGACAATGAACTATGT
ttcaccc
- - - - -aaataaa
- - - - - - - - -ctggggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct