1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagggctctcctcctcggatctcgcgtgtttggatgtgcttccgtggggtggtgggggcggcgctgatcggtcggtggttgggggtcgcgctgcagGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAG
species | Oryza sativa |
transcript | LOC_Os01g42650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCACCAGCCCTCTCCTGTCCG GGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGEST: gi|5005118|gb|AU069902.1|AU069902
genomic: GCACCAGCCCTCTCCTGTCCGgtaagggctc ... cgcgctgcagGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGG
EST: CGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCG GGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGG
genomic: CGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGgtaagggctc ... cgcgctgcagGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGG
ccgtggggtggtgggggcggcgctgatcggtcggtggttgggggtcgcgctgcagGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAG
cgctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggctctcctcctcggatctcgcgtgtttggatgtgcttccgtggggtggtgggggcggcgctgatcggtcggtggttgggggtcgcgctgcagGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA