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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagaaagcaagcctgcttgttcttactacacctgtttgaccgcttttgtgctaaaaactgatgtgcttttctgtttcctctctctttgtgttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g40630.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25798342|gb|CA754303.1|CA754303
EST:     ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGG                         GGTCATCCCGAAATCCTTGATGCCCAGAGAG
genomic: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGGgtgagtgatc ... ttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
EST: gi|29675215|gb|CB671490.1|CB671490
EST:     ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGG                         GGTCATCCCGAAATCCTTGATGCCCAGAGAG
genomic: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGGgtgagtgatc ... ttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgctaaaaactgatgtgcttttctgtttcctctctctttgtgttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
                tgtgcttttctgtttc  CT-rich tract
      taaaaact  TA-rich tract