Sequence
atgc intronic sequence ATGC exonic sequencegtaattactaactgttttaattagttcttccaacatgcatgtgtaatggtgaggtgaaatggtgatctatacgttggcttggttggtttttactgttaatttcttgatttctcggttgattatttttttgtttttgaagAGTTCAAGAAGGAGGAGTTACAGGTGCACGTGGACCCCGCCGGCCGGCTGACCGTCCGCGGCCAGCACGGCGGCCTCCGGCTGAACAAGGTGTTCCAGCT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g40550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88573516|gb|CI665087.1|CI665087EST: CGAGTGGCTCGACGCCGGCGCCCACTATCTCCTCCGNGTCAACGTCCCAG AGTTCAAGAAGGAGGAGTTACAGGTGCACGTGGACCCCGCCGGCCGGCTGA
genomic: CGAGTGGCTCGACGCCGGCGCCCACTATCTCCTCCGCGTCAACGTCCCAGgtaattacta ... gtttttgaagAGTTCAAGAAGGAGGAGTTACAGGTGCACGTGGACCCCGCCGGCCGGCTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtttttactgttaatttcttgatttctcggttgattatttttttgtttttgaagAGTTCAAGAAGGAGGAGTTACAGGTGCACGTGGACCCCGCCGGCCGGCTGACCGTCCGCGGCCAGCACGGCGGCCTCCGGCTGAACAAGGTGTTCCAGCT
ttatttttttgttttt CT-rich tract
ttgattatttttttgt TA-rich tract