Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|117232088|gb|CT842046.1|CT842046EST: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAG GGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
genomic: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAGgtcagtccta ... ttctttgcagGGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
EST:
gi|88574897|gb|CI666666.1|CI666666EST: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAG GGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
genomic: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAGgtcagtccta ... ttctttgcagGGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
EST:
gi|88574358|gb|CI666127.1|CI666127EST: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAG GGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
genomic: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAGgtcagtccta ... ttctttgcagGGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
EST:
gi|88340410|gb|CI659616.1|CI659616EST: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAG GGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
genomic: AGGGAGCAAAGCCGGCGGGAAGCCGCCGTCAATCTTGGCAAGATGGACAGgtcagtccta ... ttctttgcagGGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcgtgatgcagttttagacgagtccagcttttgacacggctgccttctttgcagGGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAGCAAGAACGGCAGCAAGATCGCGTTCAAGACGAGGTCGGAGGTGGACGTG
ttttgac putative branch site (score: 3)
ctgccttcttt putative PPT
agtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtcctatgaattctctgacaaaacaagtctcccttggttagctcgatcgtgatgcagttttagacgagtccagcttttgacacggctgccttctttgcagGGGACCGGCGCCGGTGAGCGGCGGCGCGGCGACTGGCGGCGTGCCGAGGAGCAAGAACGGCAGCAAGATCGCGTTCAAGACGAGGTCGGAGGTGGACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA