1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aattggagcttgtaatcatcaaaaggggactgcaattgaataaggattggtgctacaatggtttactgaacgtaaggttatgctgtttttctcatcacagGTCGCAAGGAACCGATCCGCATATGCAATCTGCAATGAAATAATATATGCCAACCCATCGAGGATTCTTAGAGGTGACACCATAGCAG
species | Oryza sativa |
transcript | LOC_Os01g39260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGACTAATAAGGGATTCCGGCCGATGGCGTGGCGGCGCGTCCTTTCGCAG GTCGCAAGGAACCGATCCGCATATGCAATCTGCAATGAAATAATATATGCCEST: gi|29626716|gb|CB631727.1|CB631727
genomic: GGACTAATAAGGGATTCCGGCCGATGGCGTGGCGGCGCGTCCTTTCGCAGgtgcggtttc ... ctcatcacagGTCGCAAGGAACCGATCCGCATATGCAATCTGCAATGAAATAATATATGCC
EST: GGACTAATAAGGGATTCCGGCCGATGGCGTGGCGGCGCGTCCTTTCGCAG GTCGCAAGGAACCGATCCGGATATGCAATCTGCAATGAAATAATAGCCT-C
genomic: GGACTAATAAGGGATTCCGGCCGATGGCGTGGCGGCGCGTCCTTTCGCAGgtgcggtttc ... ctcatcacagGTCGCAAGGAACCGATCCGCATATGCAATCTGCAATGAAATAATA-TATGC
attggtgctacaatggtttactgaacgtaaggttatgctgtttttctcatcacagGTCGCAAGGAACCGATCCGCATATGCAATCTGCAATGAAATAATATATGCCAACCCATCGAGGATTCTTAGAGGTGACACCATAGCAG
ctgtttttctcatc CT-rich tract
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattggagcttgtaatcatcaaaaggggactgcaattgaataaggattggtgctacaatggtttactgaacgtaaggttatgctgtttttctcatcacagGTCGCAAGGAACCGATCCGCATATGCAATCTGCAATGAAATAATATATGCCAACCCATCGAGGATTCTTAGAGGTGACACCATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - -gcttgta
- - - - - - - - catcaaa
- - - - - - - - - - - - - -gactgca
- - - - - - - - - - - - - - - - - - - - - - - - -gtgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaacg