1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaccaaatggttgctatctgccagtacaaatctgattctgagatggatttcgttccaacttccaaagcttatcttatttttggtccatgattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGCCGATGACTCTGCGGCCACTCAACACAGAGAGAAGCTTCCTCCT
species | Oryza sativa |
transcript | LOC_Os01g38980.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGNCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88410039|gb|CI573278.1|CI573278
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAG-C- --C-GTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88306295|gb|CI636680.1|CI636680
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88353520|gb|CI631705.1|CI631705
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88404056|gb|CI601466.1|CI601466
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88430655|gb|CI596769.1|CI596769
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTATACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88386832|gb|CI629159.1|CI629159
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88368498|gb|CI572707.1|CI572707
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88325807|gb|CI649642.1|CI649642
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88318151|gb|CI629432.1|CI629432
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGEST: gi|88401429|gb|CI585985.1|CI585985
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG AGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... gattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGG
tggatttcgttccaacttccaaagcttatcttatttttggtccatgattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGCCGATGACTCTGCGGCCACTCAACACAGAGAGAAGCTTCCTCCT
ttatcttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaccaaatggttgctatctgccagtacaaatctgattctgagatggatttcgttccaacttccaaagcttatcttatttttggtccatgattttgcagAGCAGTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGCCGATGACTCTGCGGCCACTCAACACAGAGAGAAGCTTCCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-caaccaa
- - - - -tggttgc
- - - - - - - - - -ctgccag
- - - - - - - - - - - - - - - - -ctgattc