1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaatggttgctatctgccagtacaaatctgattctgagatggatttcgttccaacttccaaagcttatcttatttttggtccatgattttgcagagcagTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGCCGATGACTCTGCGGCCACTCAACACAGAGAGAAGCTTCCTCCTCTCCT
species | Oryza sativa |
transcript | LOC_Os01g38980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCG TTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGEST: gi|88325807|gb|CI649642.1|CI649642
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGgtatgcacta ... tgcagagcagTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAG
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGAGCAGEST: gi|88318151|gb|CI629432.1|CI629432
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAG-C---C-Ggtatgcacta ... tgcaga
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGAGCAGEST: gi|88368498|gb|CI572707.1|CI572707
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAG-C---C-Ggtatgcacta ... tgcaga
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGAGCAGEST: gi|88386832|gb|CI629159.1|CI629159
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAG-C---C-Ggtatgcacta ... tgcaga
EST: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAGCCGAGCAG
genomic: CTTCTCCTTCATCATCTTCCTCTATTCATCGCCGCCGCCGAGCTCAG-C---C-Ggtatgcacta ... tgcaga
ttcgttccaacttccaaagcttatcttatttttggtccatgattttgcagagcagTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGCCGATGACTCTGCGGCCACTCAACACAGAGAGAAGCTTCCTCCTCTCCT
ttatcttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatggttgctatctgccagtacaaatctgattctgagatggatttcgttccaacttccaaagcttatcttatttttggtccatgattttgcagagcagTTGGGAAGGGAACAACAAGTAGACGTCGTCTTCGTCTTCTTCAAGGAGAAGCCGATGACTCTGCGGCCACTCAACACAGAGAGAAGCTTCCTCCTCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - tggttgc
- - - - - - - ctgccag
- - - - - - - - - - - - - - ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtccatg