1 5' 3' | 2 5' 3' |
...gttctcagctcgttaaggtgcaagattatttttacatatgtgctctgctttggacctctggtctggttgtgattgattgaaatacaaattgcaagtgcagGCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCGAGGAGGCTCGGGCTCCCCGTGGAGGTGCTGCAGGAGGGCCAGCCGAAGG
species | Oryza sativa |
transcript | LOC_Os01g37210.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTTCCTCCTCGCCTCGCCGTGACAAGCGATTGGAGAGCGCCGAAAG GCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCGEST: gi|58693341|gb|CK082028.1|CK082028
genomic: CCTTCTTCCTCCTCGCCTCGCCGTGACAAGCGATTGGAGAGCGCCGAAAGgtgagcaaca ... gcaagtgcagGCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCG
EST: CCTTCTTCCTCCTCGCCTCGCCGTGACAAGCGATTGGAGAGCGCCGAAAG GCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCGEST: gi|58659731|gb|CK048411.1|CK048411
genomic: CCTTCTTCCTCCTCGCCTCGCCGTGACAAGCGATTGGAGAGCGCCGAAAGgtgagcaaca ... gcaagtgcagGCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCG
EST: CCTTCTTCCTCCTCGCCTCGCCGTGACAAGCGATTGGAGAGCGCCGAAAG GCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCG
genomic: CCTTCTTCCTCCTCGCCTCGCCGTGACAAGCGATTGGAGAGCGCCGAAAGgtgagcaaca ... gcaagtgcagGCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCG
tgctttggacctctggtctggttgtgattgattgaaatacaaattgcaagtgcagGCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCGAGGAGGCTCGGGCTCCCCGTGGAGGTGCTGCAGGAGGGCCAGCCGAAGG
gattgat putative branch site (score: 4)
attgaaatacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcagctcgttaaggtgcaagattatttttacatatgtgctctgctttggacctctggtctggttgtgattgattgaaatacaaattgcaagtgcagGCGAGAATGGCATGCCCCGAGGCGCGTCTGAATAAGGATTGCAAGACGGCGAGGAGGCTCGGGCTCCCCGTGGAGGTGCTGCAGGAGGGCCAGCCGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - -gtgcaag
- - - - - - - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaaa