Sequence
atgc intronic sequence ATGC exonic sequence...gaagtatgaatgatgccagcaagctgagattttcgttgccgtgtgttgttgcaggcgctctcccttcttgacatctttgcagacaaggatgacgcctgagGCTACTGCTTCCCTGCTGCTGCTTGCTGAAGAATATCAGGGGACTGCCGGTGAAGGACACAAGTAATAAAGATTCGACGTGTATCCGTTGTGAGATATAC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g36950.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88201072|gb|CI201427.1|CI201427EST: ACAAGAGGTTCAAGACGCTGCCGGCGTCGGAGGCGCTCCCCCGGGACGAG GCTACTGCTTCCCTGCTGCTGCTTGCTGAAGAATATCAGGGGACTGCCGGT
genomic: ACAAGAGGTTCAAGACGCTGCCGGCGTCGGAGGCGCTCCCCCGGGACGAGgccatcggcg ... gacgcctgagGCTACTGCTTCCCTGCTGCTGCTTGCTGAAGAATATCAGGGGACTGCCGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttgcaggcgctctcccttcttgacatctttgcagacaaggatgacgcctgagGCTACTGCTTCCCTGCTGCTGCTTGCTGAAGAATATCAGGGGACTGCCGGTGAAGGACACAAGTAATAAAGATTCGACGTGTATCCGTTGTGAGATATAC
tcttgac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagtatgaatgatgccagcaagctgagattttcgttgccgtgtgttgttgcaggcgctctcccttcttgacatctttgcagacaaggatgacgcctgagGCTACTGCTTCCCTGCTGCTGCTTGCTGAAGAATATCAGGGGACTGCCGGTGAAGGACACAAGTAATAAAGATTCGACGTGTATCCGTTGTGAGATATAC
- - - - - tgatgcc
- - - - - - - - -agcaagc
- - - - - - - - - - - - - - - - - - tgccgtg
- - - - - - - - - - - - - - - - - - - - - - - - -tgcaggc