Sequence
atgc intronic sequence ATGC exonic sequencegtaagctaaggctagctaagcacctagggttctcccatttcgcttcgcttcttagctttccgtttggattttggtggaggcaagtttgacggtttgaagaggctgactgatatggggttgcgattcggtgctggtgtatgtgcagGTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g36840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g36840.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G030596_T01 (Zea mays), 3'ss of exon 1
gtaagctaaggctagctaagcacctagggttctcccatttcgcttcgcttcttagctttccgtttggattttggtggaggcaagtttgacggtttgaagaggctgactgatatggggttgcgattcggtgctggtgtatgtgcagGTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTG
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gtaggctatcggtcgg-aggaatctcgg----ccccaatttctgctgcctcttcgctttcctttgatacttccggtgggg--------atgg--tgatcaagctgagtgagat----ttgcgatttggtg-----gtgcgtgcagGTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGACTTCCCACAAGTGGGCTTTTGGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58689030|gb|CK077717.1|CK077717EST: GTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCG GTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTA
genomic: GTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCGgtaagctaag ... gtatgtgcagGTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtttgaagaggctgactgatatggggttgcgattcggtgctggtgtatgtgcagGTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTG
gactgat putative branch site (score: 3)