1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttaaataatgtgcgtctccaatctcaatctcaattccttccgcacatggcctccaccaaaacaatctacaataaataaagaaggcaaactcacctgcagATATCCACTTCTACTCTGTGGAGATCTGAATCAAGCACACTGCACACTGCACACACACAGAAACCATGGCGGAGGGCGTTGTAGGATCGCTGATCGGCAA
species | Oryza sativa |
transcript | LOC_Os01g36640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
catggcctccaccaaaacaatctacaataaataaagaaggcaaactcacctgcagATATCCACTTCTACTCTGTGGAGATCTGAATCAAGCACACTGCACACTGCACACACACAGAAACCATGGCGGAGGGCGTTGTAGGATCGCTGATCGGCAA
aactcac putative branch site (score: 2)
ctcacct CT-rich tract
aaaacaatctacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaataatgtgcgtctccaatctcaatctcaattccttccgcacatggcctccaccaaaacaatctacaataaataaagaaggcaaactcacctgcagATATCCACTTCTACTCTGTGGAGATCTGAATCAAGCACACTGCACACTGCACACACACAGAAACCATGGCGGAGGGCGTTGTAGGATCGCTGATCGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -aatgtgc
- - - - - - - - - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaagg